FastQCFastQC Report
Wed 31 May 2023
EGAF00007951447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439355
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62351.4191257639039045No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28530.6493609950950826No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG18360.4178853091463623No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8430.19187217625837874No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8080.1839059530448043No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7520.1711599959030852No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7310.16638026197494055No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6770.15408951758828282No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6240.14202637957915581No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6210.1413435604465637No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5100.1160792525406562No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4720.10743021019448966No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4680.10651978468436685No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)