FastQCFastQC Report
Sun 21 May 2023
EGAF00007951458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471020
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21480.4560315910152435No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17220.3655895715680863No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10720.22759118508768206No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10440.22164663920852617No Hit
GCGGACGCGACGCTCTTTAGTAGCGGTACCTGCAAAGCCCAGGG8420.17876098679461594No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8300.1762133242749777No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8230.17472718780518873No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8220.17451488259521888No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7490.15901660226741965No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7270.15434588764808288No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG7070.15009978344868583No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6500.13799838648040424No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6340.1346015031208866No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6310.13396458749097703No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5650.11995244363296675No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5640.11974013842299691No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5310.11273406649399177No Hit
CGGCTGGCCCAGAGTCGCACGGTGCAGGTTCCAGCTGCCGAAAA5240.11124793002420279No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT4780.10148189036558958No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4770.10126958515561972No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4730.10042036431574032No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4720.10020805910577045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)