FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471020
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43740.9286229884081355No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26950.572162540868753No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17130.3636788246783576No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11440.24287716020551142No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10870.23077576323722984No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10370.2201605027387372No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8470.1798225128444652No Hit
CGTCGTCGTTCCGAACTGCGCGATTACGGCG8440.17918559721455565No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8060.17111799923570126No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC7500.1592289074773895No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7220.1532843615982336No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7020.14903825739883658No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6840.1452167636193792No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6590.13990913337013292No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6360.13502611354082628No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6130.13014309371151966No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6060.1286569572417307No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6000.1273831259819116No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5840.12398624262239397No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5730.12165088531272557No Hit
GCAGCTACCGCGACCGGTCTGCCGCTGCGTG5370.11400789775381087No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5010.10636491019489619No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4980.10572799456498663No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4830.10254341641543885No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)