FastQCFastQC Report
Wed 31 May 2023
EGAF00007951460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485605
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT36700.7557582809073218No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT35640.7339298400963746No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG34210.7044820378702855No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT26210.5397390883537031No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG22710.46766404794019834No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT22430.4618980447071179No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20220.416387804903162No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC16590.3416356915600128No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16540.34060604812553413No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG15430.31774796388010834No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14850.30580410004015607No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG12890.2654420774085934No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG12230.2518507840734754No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG11890.2448492087190206No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA11420.23517056043492138No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10780.2219911244735948No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT9850.2028397565922921No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9780.20139825578402198No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG9310.19171960749992276No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA9250.1904840353785484No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT7930.1633014487083123No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT7460.15362280042421309No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG7080.14579751032217542No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT6870.14147300789736514No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6560.13508921860359757No Hit
AACGCTAGACTGTTCGCTCGGACCAGGACGTTCTGGAGTGGACT6380.13138250223947448No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5690.11717342284366923No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5500.11326077779265041No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG5380.11078963354990168No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4910.10111098526580245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)