FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951463

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951463
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456405
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16800.3680941269267427No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13230.28987412495480985No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8830.1934685202835201No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7850.17199636287946013No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7350.1610411805304499No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5640.12357445689683505No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5370.11765865842836955No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5210.11415300007668627No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5130.11240017090084464No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5000.10955182349010198No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)