FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485692
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24470.5038172339672056No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22920.4719040050072886No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18360.3780173443252102No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17710.3646343773420192No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15880.32695617798934307No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13520.2783657132503726No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12470.2567470742775257No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10060.20712715053984831No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9600.1976561277517439No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8840.1820083509713975No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8700.1791258657750179No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7840.16141917099725753No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7470.15380117440682572No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6780.13959464022466914No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6250.12868237483837494No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6230.12827059123889215No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6070.12497632244302974No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5800.11941724385001193No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5420.11159335545983876No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5370.11056389646113174No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4910.10109287367302736No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)