FastQCFastQC Report
Wed 31 May 2023
EGAF00007951474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485365
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT30120.6205639055144067No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC24220.4990059027742009No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19540.4025836226345122No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG18940.3902217918473726No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18130.3735333202847342No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13980.2880306573403521No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13940.28720653528787615No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC13000.2678396670546908No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11690.24084966983610273No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11220.23116623571951006No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9480.1953169264368053No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8520.17553799717738197No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7580.15617112894419663No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7260.14957815252438886No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7150.14731181688007994No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT6940.14298517610458109No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6750.1390705963553202No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6650.13701029122413028No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6230.1283570096731326No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6120.12609067402882368No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6090.1254725824894667No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6020.12403036889763375No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5970.12300021633203878No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5760.11867357555653993No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5590.11517105683351704No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5520.1137288432416841No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5520.1137288432416841No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5500.11331678221544611No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5310.10940220246618525No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5050.10404540912509143No Hit
ATCCAGGACCAGGTCTACATGGGTACCGCCGTTTTTGGTGTGGA5000.10301525655949646No Hit
GGTCGCACCGTCGGCGCGGCCCATATCAGAAGACTGCTGGCCCA4880.10054289040206854No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)