FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951476

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951476
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437248
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG16670.38124817037470726No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG14280.3265881147540984No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG14090.3222427546838407No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG11360.25980679156908665No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG9980.22824575526932084No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG9390.214752268735363No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG9200.2104069086651054No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8440.19302546838407494No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8280.18936621779859483No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG8250.18868010831381732No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8150.18639307669789226No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7770.17770235655737704No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7720.17655884074941453No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG7480.17106996487119439No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG7420.16969774590163933No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7200.16466627634660422No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6280.1436255854800937No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT6270.14339688231850117No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5900.13493486533957846No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5790.1324191305620609No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5550.12693025468384075No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5140.11755342505854802No Hit
TGGCTGTTCGTTATCTACCTCGATGATTGCAACGCACGCACCAC4940.11297936182669789No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT4700.10749048594847774No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4650.10634697014051524No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT4540.10383123536299767No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4520.10337382903981265No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)