FastQCFastQC Report
Sun 21 May 2023
EGAF00007951477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437248
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45771.0467743706088992No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC17220.39382684426229503No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG17220.39382684426229503No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC16630.38033335772833726No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG13490.3085205649882904No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC10740.2456271955503513No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9900.22641612997658078No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG9900.22641612997658078No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9610.21978373829039813No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9450.21612448770491804No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9390.214752268735363No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9090.20789117388758782No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG9000.20583284543325528No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8790.20103007903981263No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG8420.19256806206088992No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8230.18822270199063232No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG7630.17450051229508196No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7540.1724421838407494No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7120.1628366510538642No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6470.14797094555035128No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC6350.14522650761124123No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6070.13882281908665106No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6030.13790800644028103No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5340.12212748829039813No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5280.1207552693208431No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5150.11778212822014052No Hit
GGCCCGGCTCACTCCAAAGAAGTTCCGGCAC5070.11595250292740046No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC4880.11160714285714285No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4820.11023492388758782No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4710.10771918911007025No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)