FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429023
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8340.19439517228680048No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7120.16595846842710063No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7030.1638606787981064No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5540.12913060605142382No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4910.11444607864846408No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4890.11397990317535424No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)