FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429023
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45361.057285973013102No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8840.2060495591145463No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8660.20185397985655779No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7650.17831211846451123No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7000.16316141558844166No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6460.15057467781447614No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5410.1261004654762099No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4760.11094976260014032No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4420.10302477955727316No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)