FastQCFastQC Report
Sun 21 May 2023
EGAF00007951483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439055
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34660.7894227374702486No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21130.48126088986573434No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14870.3386819418979399No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12840.29244627666237716No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG10950.24939927799478423No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7690.1751488993406293No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7560.1721879946703716No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6720.15305599526255254No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5870.13369623395702132No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5640.1284577103096423No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5440.12390247235539967No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4830.11000899659495962No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)