FastQCFastQC Report
Wed 31 May 2023
EGAF00007951485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416703
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42081.0098319426546005No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA36560.8773634939033317No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21340.5121153435420431No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15590.3741273760928047No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13700.3287713311399246No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13670.32805139391845034No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12810.30741319356952074No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12450.2987739469118293No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11240.269736478979033No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10750.25797750436161965No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8900.2135813757040386No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8780.21070162681814147No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8670.20806185700606908No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6440.15454652354314702No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6150.14758713040222893No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6030.14470738151633178No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5840.1401477791136613No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4180.10031125285875071No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)