FastQCFastQC Report
Sun 21 May 2023
EGAF00007951495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476313
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA19120.40141671547910723No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13520.283846966175603No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10860.22800133525643854No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10800.22674165937104385No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10640.22338252367665798No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9270.1946199242934793No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9040.18979116673279964No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8360.17551484003165985No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8010.16816673070019084No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7160.1503213223237661No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7110.14927159241927052No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6900.14486272682038911No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6700.14066380720240682No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6100.12806704834845994No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5990.12575764255856967No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG5870.12323829078778031No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5840.12260845284508297No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5530.1161001274372104No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5250.11022163997203518No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5170.10854207212484229No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5070.10644261231585112No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5010.10518293643045644No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4950.10392326054506175No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG4920.10329342260236442No Hit

[OK]Adapter Content

Adapter graph