FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951497

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951497
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483660
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA19540.4040028118926519No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12810.26485547698796674No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11560.2390108754083447No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10740.22205681677211264No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10150.20985816482653102No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9410.19455816069139478No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9130.18876896993755946No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9040.18690815862382665No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8010.1656122069222181No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7710.15940950254310882No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7670.1585824752925609No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7160.1480378778480751No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6900.14266220071951372No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6810.1408013894057809No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6410.13253111690030187No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6250.12922300789811023No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG5750.11888516726626143No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5570.11516354463879586No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5530.11433651738824795No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5470.11309597651242607No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5290.1093743538849605No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5220.10792705619650168No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5060.10461894719431006No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG4950.10234462225530332No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4920.10172435181739238No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)