FastQCFastQC Report
Sun 21 May 2023
EGAF00007951499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520090
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43910.8442769520659886No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19750.3797419677363533No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14310.2751446864965679No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10810.2078486415812648No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA9540.18342979099771195No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9180.1765079120921379No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8050.15478090330519717No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5900.1134419042857967No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5770.11094233690322829No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5460.10498183006787287No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)