FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418018
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45701.0932543574678604No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17310.41409700060762933No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14530.34759268739623655No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14150.33850216976302455No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13400.32056035864484306No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11240.2688879426244803No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG10180.24353018291078374No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9400.22487069934787499No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8920.2133879402322388No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8510.20357975015429958No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8080.19329311177987551No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7620.18228880096072417No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7600.18181035266423934No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7320.17511207651345156No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7010.16769612791793653No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6810.16291164495308813No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6250.1495150926515126No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5650.1351616437569674No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5400.12918104005090691No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5350.1279849193096948No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5200.1243965570860585No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4970.11889440167648284No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4970.11889440167648284No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4950.11841595337999798No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4950.11841595337999798No Hit
GAAACTCTGTATCAGAAAACCGACGCAGGTA4700.11243534967393749No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4540.10860776330205878No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4370.10454095278193763No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4200.10047414226181649No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)