FastQCFastQC Report
Wed 31 May 2023
EGAF00007951511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452472
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49321.090012199649923No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11240.24841316147739528No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9280.2050955639243975No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6910.15271663218939516No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6400.1414452164995845No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6080.13437295567460528No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6060.13393093937304407No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5770.12752170300040666No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4750.10497887162078537No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4710.10409483901766298No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)