FastQCFastQC Report
Wed 31 May 2023
EGAF00007951519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483802
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30410.6285629245021723No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17090.3532436823328552No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16410.3391883456455327No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15800.32657988185249337No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15630.3230660476806627No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC13240.27366567314727924No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12870.2660179164203538No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12370.2556831100326167No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12120.2505157068387481No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG12060.24927553007221964No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11990.24782865717793645No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10920.22571217150817896No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10490.21682423801472503No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10010.20690282388249737No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9640.1992550671555719No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9330.1928474871951749No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9180.18974704527885375No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8980.1856131227237589No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7710.15936271449890657No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7630.15770914547686862No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7500.155022095816057No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7440.15378191904952854No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7050.14572077006709355No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7010.1448939855560746No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7000.14468728942831985No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6620.13683283657363962No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6160.12732481469692147No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5920.12236410763080766No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5510.1138895663928632No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5470.11306278188184422No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5400.11161590898756102No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)