FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443088
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10090.22772000144440832No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8010.18077673058173546No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7550.17039504567941358No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7360.16610695843715018No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7110.16046473838154046No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6930.15640233994150146No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6870.15504820712815515No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6820.15391976311703318No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6490.14647203264362835No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5470.1234517748167407No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG4700.10607373704546275No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4630.10449391542989203No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4480.1011085833965262No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)