FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007951523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475471
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37060.779437652348934No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34570.7270685278387116No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15090.3173695135980954No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10980.23092891049086064No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7340.15437324253214182No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7280.15311133591743767No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6120.12871447469982394No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6030.1268216147777677No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5890.12387716601012469No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5850.12303589493365527No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5650.11882953955130807No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5530.11630572632189976No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5470.11504381970719559No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5210.10957555771014425No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)