FastQCFastQC Report
Sun 21 May 2023
EGAF00007951525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446595
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT63621.4245569251782937No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC38460.8611829509958688No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34860.780573002384711No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG21920.4908250204323828No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21140.47335953156663196No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19980.44738521479192556No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17740.39722791343387187No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC16410.3674470157525275No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16280.36453610094156896No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG14590.3266942083991088No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13720.30721347081807904No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA11260.25213000593378787No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC10340.23152968573315869No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9560.21406419686740785No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9170.2053314524345324No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9090.20354012024317333No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8780.196598708001657No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG8290.18562679832958273No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7850.1757744712771079No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6990.156517650219998No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6360.14241090921304536No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6080.13614124654328866No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5940.1330064152084103No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5340.11957142377321735No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5190.1162126759144191No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5180.11598875939049923No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG5170.11576484286657934No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4960.1110625958642618No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4880.10927126367290274No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4810.10770384800546356No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4760.10658426538586414No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4530.10143418533570686No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4480.10031460271610743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)