FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446919
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11920.266714997572267No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11040.24702462862397886No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8790.1966799352902875No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6210.1389513536009881No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG5860.13111995686019168No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5750.12865866074165563No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4950.11075832533412094No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4540.10158440343775942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)