FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446919
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37560.840420747383754No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12640.28282529943904827No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11740.2626874221055717No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11150.24948592474251488No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7790.17430451603086913No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6180.13828009102320554No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC6110.13671381167504626No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5920.13246248201575678No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5390.12060350980826504No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4860.1087445376007733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)