FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483118
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35520.7352241067399683No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12290.2543891968421793No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10470.21671724092250755No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9140.1891877346735166No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7480.1548275990544753No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6440.13330076710037714No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6040.1250212163488009No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5890.12191638481695982No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5430.11239490145264718No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5360.11094598007112134No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5080.105150294545018No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)