FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395053
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9470.23971467119601672No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT9390.23768962645518452No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8070.20427638823145247No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6310.15972540393314316No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5940.15035957200679403No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5820.14732200489554564No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5460.13820930356180058No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5450.13795617296919654No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5430.13744991178398847No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT5290.13390608348753205No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5240.1326404305245119No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5220.13213416933930386No Hit
CGCGGACAGAGTCACGCCAGACGCCGGAGCCCAGTTGCCCAGTG5220.13213416933930386No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5190.13137477756149174No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5060.12808407985763934No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4980.12605903511680713No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4920.12454025156118294No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT4440.11238998311618947No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4320.1093524160049411No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA4180.10580858770848468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)