FastQCFastQC Report
Sun 21 May 2023
EGAF00007951533

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951533
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395053
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13680.3462826506823135No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10590.2680652975676681No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9670.24477728304809734No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9180.23237388401049988No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8750.22148926852852657No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7480.1893416832678147No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6660.1685849746742842No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6210.15719409800710285No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5760.14580322133992146No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5750.14555009074731745No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5730.1450438295621094No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5620.14225939304346505No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5500.1392218259322167No Hit
ACCGTTACCCCGCCAACTCAGACCGGTTGCG5470.1384624341544046No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5410.13694365059878041No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5340.1351717364505522No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5220.13213416933930386No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5030.12732468807982728No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4860.12302146800555874No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC4630.11719946437566606No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4470.11314937489400156No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4390.11112433015316933No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4330.10960554659754515No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA4200.10631484889369275No Hit

[OK]Adapter Content

Adapter graph