FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390703
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11760.3009958971392592No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10540.2697701322999823No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8470.2167887116300617No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6490.16611083098926807No Hit
ACGGTGCGCACGGGTGATAACGTCGTGGTCATCGGAACGGTCGT6320.1617596998231393No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6090.15587287530425925No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5340.1366767083948677No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5100.13053393498386243No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4290.10980207472171956No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4140.10596284133984127No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)