FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427748
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40880.9557028904869221No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14010.32752929294818445No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11600.2711877086508879No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10010.23401628996511967No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9420.2202231220251176No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9080.21227451677155706No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8860.20713130160748852No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8620.20152052142850463No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8240.19263678614511348No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7660.17907740071256908No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7480.17486931557833119No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7340.1715963604739239No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7240.16925853539934727No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7140.16692071032477065No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7050.1648166677576517No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5690.13302224674340968No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5670.13255468172849436No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5630.13161955169866368No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5510.12881416160917175No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5380.12577498901222214No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5320.12437229396747616No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4800.11221560357967775No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4760.11128047354984712No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG4690.10964399599764348No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4540.10613725838577853No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)