FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007951541

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences391250
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34130.872332268370607No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22670.5794249201277956No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12070.30849840255591054No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10250.26198083067092653No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9600.2453674121405751No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7110.18172523961661344No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6960.1778913738019169No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6290.1607667731629393No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6180.15795527156549521No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5910.15105431309904155No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5720.14619808306709264No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5600.14313099041533545No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4660.11910543130990414No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4520.11552715654952078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)