FastQCFastQC Report
Wed 31 May 2023
EGAF00007951546

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951546
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences387489
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21420.5527898856483667No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17720.4573033040937936No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17150.44259320909754857No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG15210.3925272717419075No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT13170.3398806159658726No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12630.3259447364957457No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11950.30839585123706736No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA11670.3011698396599645No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG10770.27794337387641976No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9710.2505877586202447No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9190.23716802283419658No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8600.22194178415387275No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8510.21961913757551826No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA8420.21729649099716378No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8300.21419962889269117No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT8000.2064574736315095No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT7810.2015541086327612No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG7770.20052182126460363No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7160.18477943890020104No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6010.15510117706567156No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG5630.14529444706817485No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5220.13471350154456No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4860.12542291523114205No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4590.1184549754960786No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4440.1145838978654878No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT4400.11355161049733024No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC3930.10142223392147906No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)