FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences387489
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA39191.0113835489523575No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22200.572919489327439No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21650.5587255380152727No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18210.46994882435372365No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16710.43123804804781557No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC16170.41730216857768865No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13460.3473646993850148No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12410.3202671559708792No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC11910.30736356386890984No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG10820.2792337330866167No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9150.23613573546603903No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT9120.23536151993992088No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT8800.2271032209946605No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT7910.20413482705315505No Hit
TACGACGACTTCCATACCGATGAAGATAAAC7630.1969088154760522No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7250.18710208547855553No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6740.1739404215345468No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6700.17290813416638925No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6590.17006934390395598No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5130.1323908549662055No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5100.13161663944008734No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5010.12929399286173285No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4950.12774556180949653No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4790.12361641233686635No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4540.11716461628588166No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4170.10761595813042434No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4010.10348680865779417No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)