FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007951549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450903
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25530.5661971643568573No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16720.37081146055803577No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14060.31181872819653006No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11760.26080997465086725No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11010.2441766854511946No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10680.23685803820333862No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG9920.22000297181433698No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG9790.2171198683530604No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9590.21268432456648104No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8560.18984127406559725No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8120.18008307773512264No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT7930.17586931113787221No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7720.17121199016196387No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7610.16877244107934522No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7270.16123201664216028No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7210.15990135350618648No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6690.14836893966108008No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6460.14326806430651381No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6300.13971962927725032No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6060.13439697673335507No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5940.13173565046140745No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5870.13018321013610468No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5130.11377169812576096No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5000.11088859466448439No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4520.10024328957669389No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)