FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434127
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA16950.39043874257993627No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14960.34459962176966646No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11390.262365621120087No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10220.2354149822517374No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9200.2119195534947147No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8620.19855940773091746No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8160.1879634300561817No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7940.18289578855956895No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7770.17897988376673185No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7750.1785191890852216No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7600.17506397897389475No Hit
GTGAGCGATGCCGTCGCTAACGGCCTGAAGG7260.1672321693882205No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6320.14557951935723878No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5690.13106763688966594No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC5540.12761242677833906No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5520.12715173209682878No Hit
TTCGTCGAACTGATGCAGCCGCTGAAACGTT4930.11356123899227645No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4450.10250456663603047No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4410.10158317727300997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)