FastQCFastQC Report
Wed 31 May 2023
EGAF00007951553

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951553
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501879
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30490.6075169512970258No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27340.5447528189065491No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA22560.4495107386441752No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC12580.2506580271340303No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12270.2444812395019517No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12160.24228947614863341No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11330.22575162539177773No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10090.2010444748634631No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9820.19566469208713655No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8090.16119423207585892No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7450.14844215438382558No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7330.14605113981656934No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7010.13967510097055266No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6760.13469382062210214No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6200.12353575264157296No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5680.11317468951679588No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)