FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951555

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951555
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518122
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31520.608350928931796No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27470.5301840107156229No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12510.24144892515662333No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12010.23179868833981188No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10480.20226896368036873No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10480.20226896368036873No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9690.18702158950980657No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8090.1561408316960098No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5690.10981969497531469No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5600.10808265234828862No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5390.1040295528852278No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)