FastQCFastQC Report
Wed 31 May 2023
EGAF00007951558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474317
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT32920.694050603288518No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG18010.37970386893153735No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15080.31793083528526284No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14280.3010644779756998No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12420.26185019723096575No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11950.25194121231159755No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA11860.2500437471142717No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG11770.24814628191694582No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11340.2390806148630557No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG10650.2245333816835576No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9920.20914283063858136No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9840.20745619490762507No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9340.1969147215891482No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG9080.1914331554635402No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8920.1880598840016276No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8660.1825783178760196No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG8440.1779400696158898No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8400.17709675175041165No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8230.1735126508221295No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7690.16212785963817447No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7490.1579112703107837No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7460.1572787819116751No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT7260.15306219258428436No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6830.14399652553039424No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6510.137249982606569No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT6350.13387671114465644No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6100.128605974485418No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5860.12354606729254908No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5840.12312440835981No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5600.1180645011669411No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5570.1174320127678325No Hit
CTGACGGTTGATTTCATCTTTGGTGCGGACGTTGTCGGCGTGTG5500.11595620650324572No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5410.11405874130591988No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5360.1130045939740722No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5130.10815551624757283No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5110.10773385731483376No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG4880.10288477958833439No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4850.10225229118922578No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4850.10225229118922578No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)