FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445134
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9770.21948446984503545No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9570.2149914407796304No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9040.20308491375630708No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7890.1772499966302282No Hit
GTACTCCGGTTTGGTCAGCTGCATGGTAATCGCTTCACGCTGCA7050.1583792745555271No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6890.15478485130320307No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6810.15298763967704107No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6500.1460234446256633No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6210.139508552480826No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5570.1251308594715299No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5420.12176108767247616No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5110.11479689262109836No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4710.10581083449028833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)