FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951563

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951563
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445134
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63181.419347881761447No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10300.23139099686835876No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9650.21678865240579243No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9460.21252027479365765No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8890.19971514195725334No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8340.1873593120273895No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8020.18017046552274146No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7580.17028580157885043No Hit
CGTGCCTCTGCTAAACTGCAACGCGAAGCGC7480.1680392870461479No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6860.15411089694339233No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6200.13928390102755575No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5990.13456622050888048No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5580.12535551092480016No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5220.11726805860707112No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5130.11524619552763886No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5100.11457224116782812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)