FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442059
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19660.444737014742376No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18160.4108048925595905No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14430.3264270153983971No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14030.31737844948298755No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13950.31556873629990567No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13440.3040318147577586No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10310.2332267864696794No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9300.21037915753327044No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8570.19386552473764812No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7620.17237518068855062No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7200.16287418647737065No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7080.16015961670274784No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6610.1495275517521417No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6320.14296734146346982No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5210.11785757104820849No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5190.11740514275243802No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5170.11695271445666755No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4720.10677307780183189No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC4680.10586822121029092No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4600.10405850802720903No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)