FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951567

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951567
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442059
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27720.6270656179378771No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26280.5944907806424029No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18390.4160078179609509No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15560.35198921410942885No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15220.3442979330813308No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15010.3395474359757408No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14210.3214503041449218No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11020.2492879909695312No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10080.22802386106831893No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8810.19929466428689385No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8660.19590145206861528No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7500.16966061091392778No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7500.16966061091392778No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7430.16807711187873112No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7360.16649361284353445No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7040.15925476011120687No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6420.14522948294232219No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6300.14251491316769935No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6250.14138384242827315No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5620.12713235111150323No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5590.1264537086678475No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5300.11989349837917562No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4940.11174978905530711No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC4780.1081303626891433No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)