FastQCFastQC Report
Sun 21 May 2023
EGAF00007951573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436780
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63261.4483263885709052No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA33380.764229131370484No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC22690.519483492833921No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG21700.49681761985438894No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG21010.48102019323229084No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19720.45148587389532485No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG19460.4455332203855488No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19240.4404963597234306No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG16210.3711250515133477No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG15870.3633408123082559No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14760.33792756078575026No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG14050.32167223773982323No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC13700.313659050322817No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12680.2903063327075415No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10340.23673245111955676No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA10250.23467191721232658No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9410.2154402674115115No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG8480.19414808370346626No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8130.18613489628646No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7720.17674801959796693No Hit
AACGTAACCACCAACCAGGACGGCACCGTCT7290.16690324648564495No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7190.1646137643665003No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6860.15705847337332296No Hit
ATGGGTTCCATTTTCAAACCGAAAATGCCAC6700.1533953019826915No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6510.14904528595631666No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6370.14584001098951416No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6140.1405742021154815No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5920.13553734145336324No Hit
GGCGCCGAAACCGAAGAAGGTGGTGACGATC5890.13485049681761985No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5680.1300425843674161No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5490.12569256834104126No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5450.12477677549338338No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5300.12134255231466642No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5240.11996886304317964No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5130.11745043271212052No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4930.11287146847383121No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4820.11035303814277211No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4790.1096661935070287No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG4500.10302669536150923No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA4430.10142405787810797No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)