FastQCFastQC Report
Wed 31 May 2023
EGAF00007951575

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951575
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427767
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63301.4797775424471733No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23800.5563776541902484No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15420.36047661460561475No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12130.28356558593813924No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10090.23587607272183223No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9280.21694053070947503No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8410.19660235595546174No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8190.19145936923605608No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7900.184679977651385No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7820.1828098006625102No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7600.17766681394310455No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7320.1711211944820428No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7180.16784838475151193No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6650.15545846220021647No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6640.15522469007660714No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5920.13839309717673406No Hit
TTCCAGAACGGTGCTAAATCCCTGTCTGTTG5700.1332501104573284No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5320.12436676976017318No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5180.12109396002964232No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4820.11267816357970577No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4540.10613254411864403No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4320.10098955739923839No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4310.100755785275629No Hit

[OK]Adapter Content

Adapter graph