FastQCFastQC Report
Wed 31 May 2023
EGAF00007951577

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951577
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455904
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66311.4544728714817154No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25680.5632764792587913No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17600.38604618516178846No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10690.23447918860110903No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC10610.23272443321400998No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10410.22833754474626236No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10350.22702147820593807No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8010.1756948831332912No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7850.17218537235909315No Hit
GTTATTTCTCTGACTCGTCGCACCCGTCAGA7410.16253421773004842No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6190.1357741980767881No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5810.12743910998806765No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG5540.1215168105566084No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5520.12107812170983365No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5400.1184459886291851No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5020.11011090054046466No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4890.10725942303642871No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4720.10353056783884328No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)