FastQCFastQC Report
Wed 31 May 2023
EGAF00007951579

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951579
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504366
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32030.6350547023391743No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16730.33170356447500426No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13080.2593354825662317No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11200.2220609636652748No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9420.18676913193990077No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8240.16337342326802362No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8110.16079592993976596No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8040.15940804891685798No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6730.13343484691672317No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6680.13244350332893176No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6260.12411621719148397No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5270.10448761415321414No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5270.10448761415321414No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5180.10270319569518961No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)