FastQCFastQC Report
Wed 31 May 2023
EGAF00007951580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506640
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG23190.4577214590241591No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG16380.32330648981525345No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13470.26586925627664615No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11990.23665719248381492No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT11760.23211747986736142No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6470.127704089688931No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5870.1158613611242697No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)