FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007951583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459911
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65071.4148389579723033No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13950.3033195553052656No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9580.20830117131358022No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8010.17416413175592668No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7820.1700328976693317No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7660.16655396370167272No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7210.15676946191763189No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7200.1565520285446532No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7050.15329052794997294No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6010.1306774571601897No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5590.12154525549508492No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5130.1115433203380654No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5020.10915155323529986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)