FastQCFastQC Report
Wed 31 May 2023
EGAF00007951584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444846
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11920.2679579000373163No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10030.22547128669247338No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9950.2236729115244377No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT9790.2200761611883663No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9040.20321639398803182No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7650.17196962544341188No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7280.16365214029124686No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6620.14881554515495252No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6560.14746676377892573No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6430.14454440413086775No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6410.14409481033885882No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5880.13218057485062246No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5810.13060699657859123No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT5780.12993260589057787No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5720.1285838245145511No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5660.12723504313852435No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5640.12678544934651542No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5470.1229639021144396No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5380.12094073005039946No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5280.11869276109035486No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5250.11801837040234149No Hit
GTTGGCGGTGCCGGTAATGGTCGGTACGGAGTTACGGAAGCCGG5130.11532080765028797No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG4730.10632893181010956No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4690.10542974422609172No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT4660.10475535353807834No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4600.10340657216205157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)