FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500002
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG23410.4681981272074912No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22010.4401982392070432No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20650.412998348006608No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20080.4015983936064256No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG19630.3925984296062816No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19270.3853984584061664No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG17900.357998568005728No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG16500.32999868000528No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14780.29559881760472956No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14190.28379886480454075No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14060.2811988752044992No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13200.26399894400422397No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12440.24879900480398076No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT11800.235999056003776No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10530.21059915760336959No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10350.20699917200331197No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9850.19699921200315196No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9290.18579925680297277No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9280.18559925760296958No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9180.18359926560293757No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8960.17919928320286718No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8810.17619929520281918No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8770.17539929840280638No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8760.1751992992028032No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8000.15999936000256No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7880.15759936960252158No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG7270.1453994184023264No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG6970.1393994424022304No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6880.1375994496022016No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6880.1375994496022016No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6660.1331994672021312No Hit
GTTGCGTGGGCCGGTCGGCAGGGTATCTGCTACACGAGCTACCG6600.13199947200211198No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6480.1295994816020736No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6400.127999488002048No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5950.11899952400190399No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5800.11599953600185599No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5490.1097995608017568No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA5410.10819956720173118No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5400.107999568001728No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5390.1077995688017248No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5380.10759956960172161No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC5370.10739957040171838No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5320.10639957440170239No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5310.10619957520169919No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC5260.10519957920168319No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG5020.1003995984016064No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)