FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951599

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951599
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500002
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49060.9811960752156991No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA46320.9263962944148224No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29480.5895976416094336No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29390.5877976488094048No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG24470.48939804240783036No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21350.426998292006832No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG20550.41099835600657597No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20220.40439838240647036No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG20130.40259838960644156No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18590.3717985128059488No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16920.3383986464054144No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG16420.3283986864052544No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15580.31159875360498557No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC12940.25879896480414083No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11290.2257990968036128No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10950.21899912400350396No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10720.2143991424034304No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG10460.2091991632033472No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10240.20479918080327678No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9830.19659921360314558No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9330.18659925360298557No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9090.18179927280290878No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9020.1803992784028864No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8760.1751992992028032No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8690.17379930480278077No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8320.16639933440266239No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8130.16259934960260158No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7930.1585993656025376No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG7400.147999408002368No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7180.1435994256022976No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6810.1361994552021792No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6810.1361994552021792No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6810.1361994552021792No Hit
GTTGTTCCGCCGGGTGCCCCGGCAACTTGCG6800.135999456002176No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6250.124999500002No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG6170.12339950640197438No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6020.12039951840192638No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5920.11839952640189438No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5690.11379954480182079No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG5670.11339954640181438No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG5570.11139955440178238No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5550.110999556001776No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG5360.1071995712017152No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5360.1071995712017152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)